ShinySOM: graphical SOM-based analysis of single-cell cytometry data.
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- Record sourced from PubMed, PMID 32049322.
- Also identified by DOI 10.1093/bioinformatics/btaa091 and PMC identifier 7214046.
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Abstract
ShinySOM offers a user-friendly interface for reproducible, high-throughput analysis of high-dimensional flow and mass cytometry data guided by self-organizing maps. The software implements a FlowSOM-style workflow, with improvements in performance, visualizations and data dissection possibilities. The outputs of the analysis include precise statistical information about the dissected samples, and R-compatible metadata useful for the batch processing of large sample volumes. ShinySOM is free and open-source, available online at gitlab.com/exaexa/ShinySOM. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Algorithms
- Software