ReDU: a framework to find and reanalyze public mass spectrometry data.
other · Level V
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- Record sourced from PubMed, PMID 32807955.
- Also identified by DOI 10.1038/s41592-020-0916-7 and PMC identifier 7968862.
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Abstract
We present ReDU ( https://redu.ucsd.edu/ ), a system for metadata capture of public mass spectrometry-based metabolomics data, with validated controlled vocabularies. Systematic capture of knowledge enables the reanalysis of public data and/or co-analysis of one's own data. ReDU enables multiple types of analyses, including finding chemicals and associated metadata, comparing the shared and different chemicals between groups of samples, and metadata-filtered, repository-scale molecular networking.
Medical subject headings
- Databases, Chemical
- Mass Spectrometry
- Metabolomics
- Software