CONCUR: quick and robust calculation of codon usage from ribosome profiling data.
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- Record sourced from PubMed, PMID 32866237.
- Also identified by DOI 10.1093/bioinformatics/btaa733 and PMC identifier 8097682.
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Abstract
CONCUR is a standalone tool for codon usage analysis in ribosome profiling experiments. CONCUR uses the aligned reads in BAM format to estimate codon counts at the ribosome E-, P- and A-sites and at flanking positions. CONCUR is written in Perl and is freely available at https://github.com/susbo/concur. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Codon Usage
- Software