MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities.
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- Record sourced from PubMed, PMID 32960962.
- Also identified by DOI 10.1093/bioinformatics/btaa838 and PMC identifier 8193707.
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Abstract
We developed the MicrobiomeExplorer R package to facilitate the analysis and visualization of microbial communities. The MicrobiomeExplorer R package allows a user to perform typical microbiome analytic workflows and visualize their results, either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows, the application enables automated analysis report generation. Available at https://github.com/zoecastillo/microbiomeExplorer. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Microbiota
- Software