eMPRess: a systematic cophylogeny reconciliation tool.

Santichaivekin, Santi; Yang, Qing; Liu, Jingyi; Mawhorter, Ross; Jiang, Justin; Wesley, Trenton; Wu, Yi-Chieh; Libeskind-Hadas, Ran · Bioinformatics · 2021

other · Level V

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Abstract

We describe eMPRess, a software program for phylogenetic tree reconciliation under the duplication-transfer-loss model that systematically addresses the problems of choosing event costs and selecting representative solutions, enabling users to make more robust inferences. eMPRess is freely available at http://www.cs.hmc.edu/empress. Supplementary data are available at Bioinformatics online.

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