BioCommons: a robust java library for RNA structural bioinformatics.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 33532837.
- Also identified by DOI 10.1093/bioinformatics/btab069 and PMC identifier 8428578.
- No licence information is recorded for this record.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
Biomolecular structures come in multiple representations and diverse data formats. Their incompatibility with the requirements of data analysis programs significantly hinders the analytics and the creation of new structure-oriented bioinformatic tools. Therefore, the need for robust libraries of data processing functions is still growing. BioCommons is an open-source, Java library for structural bioinformatics. It contains many functions working with the 2D and 3D structures of biomolecules, with a particular emphasis on RNA. The library is available in Maven Central Repository and its source code is hosted on GitHub: https://github.com/tzok/BioCommons. Supplementary data are available at Bioinformatics online.