Quickomics: exploring omics data in an intuitive, interactive and informative manner.

Gao, Benbo; Zhu, Jing; Negi, Soumya; Zhang, Xinmin; Gyoneva, Stefka; Casey, Fergal; Wei, Ru; Zhang, Baohong · Bioinformatics · 2021

other · Level V

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Abstract

We developed Quickomics, a feature-rich R Shiny-powered tool to enable biologists to fully explore complex omics statistical analysis results and perform advanced analysis in an easy-to-use interactive interface. It covers a broad range of secondary and tertiary analytical tasks after primary analysis of omics data is completed. Each functional module is equipped with customizable options and generates both interactive and publication-ready plots to uncover biological insights from data. The modular design makes the tool extensible with ease. Researchers can experience the functionalities with their own data or demo RNA-Seq and proteomics datasets by using the app hosted at http://quickomics.bxgenomics.com and following the tutorial, https://bit.ly/3rXIyhL. The source code under GPLv3 license is provided at https://github.com/interactivereport/Quickomics for local installation. Supplementary data are available at Bioinformatics online.