Splice site m<sup>6</sup>A methylation prevents binding of U2AF35 to inhibit RNA splicing.

Mendel, Mateusz; Delaney, Kamila; Pandey, Radha Raman; Chen, Kuan-Ming; Wenda, Joanna M; Vågbø, Cathrine Broberg; Steiner, Florian A; Homolka, David et al. · Cell · 2021

basic_science · Level V

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Abstract

The N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) RNA modification is used widely to alter the fate of mRNAs. Here we demonstrate that the C. elegans writer METT-10 (the ortholog of mouse METTL16) deposits an m<sup>6</sup>A mark on the 3' splice site (AG) of the S-adenosylmethionine (SAM) synthetase pre-mRNA, which inhibits its proper splicing and protein production. The mechanism is triggered by a rich diet and acts as an m<sup>6</sup>A-mediated switch to stop SAM production and regulate its homeostasis. Although the mammalian SAM synthetase pre-mRNA is not regulated via this mechanism, we show that splicing inhibition by 3' splice site m<sup>6</sup>A is conserved in mammals. The modification functions by physically preventing the essential splicing factor U2AF35 from recognizing the 3' splice site. We propose that use of splice-site m<sup>6</sup>A is an ancient mechanism for splicing regulation.

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