Multi-site MRI harmonization via attention-guided deep domain adaptation for brain disorder identification.

Abstract

Structural magnetic resonance imaging (MRI) has shown great clinical and practical values in computer-aided brain disorder identification. Multi-site MRI data increase sample size and statistical power, but are susceptible to inter-site heterogeneity caused by different scanners, scanning protocols, and subject cohorts. Multi-site MRI harmonization (MMH) helps alleviate the inter-site difference for subsequent analysis. Some MMH methods performed at imaging level or feature extraction level are concise but lack robustness and flexibility to some extent. Even though several machine/deep learning-based methods have been proposed for MMH, some of them require a portion of labeled data in the to-be-analyzed target domain or ignore the potential contributions of different brain regions to the identification of brain disorders. In this work, we propose an attention-guided deep domain adaptation (AD²A) framework for MMH and apply it to automated brain disorder identification with multi-site MRIs. The proposed framework does not need any category label information of target data, and can also automatically identify discriminative regions in whole-brain MR images. Specifically, the proposed AD²A is composed of three key modules: (1) an MRI feature encoding module to extract representations of input MRIs, (2) an attention discovery module to automatically locate discriminative dementia-related regions in each whole-brain MRI scan, and (3) a domain transfer module trained with adversarial learning for knowledge transfer between the source and target domains. Experiments have been performed on 2572 subjects from four benchmark datasets with T1-weighted structural MRIs, with results demonstrating the effectiveness of the proposed method in both tasks of brain disorder identification and disease progression prediction.