Sparse allele vectors and the savvy software suite.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 33989384.
- Also identified by DOI 10.1093/bioinformatics/btab378 and PMC identifier 9502232.
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Abstract
The sparse allele vectors file format is an efficient storage format for large-scale DNA variation data and is designed for high throughput association analysis by leveraging techniques for fast deserialization of data into computer memory. A command line interface has been developed to complement the storage format and supports basic features like importing, exporting and subsetting. Additionally, a C++ programming API is available allowing for easy integration into analysis software. https://github.com/statgen/savvy. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software