COBREXA.jl: constraint-based reconstruction and exascale analysis.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 34791064.
- Also identified by DOI 10.1093/bioinformatics/btab782 and PMC identifier 8796381.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
COBREXA.jl is a Julia package for scalable, high-performance constraint-based reconstruction and analysis of very large-scale biological models. Its primary purpose is to facilitate the integration of modern high performance computing environments with the processing and analysis of large-scale metabolic models of challenging complexity. We report the architecture of the package, and demonstrate how the design promotes analysis scalability on several use-cases with multi-organism community models. https://doi.org/10.17881/ZKCR-BT30. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software
- Computing Methodologies