EcoPLOT: dynamic analysis of biogeochemical data.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 34927685.
- Also identified by DOI 10.1093/bioinformatics/btab842 and PMC identifier 8825466.
- Licence recorded as CC BY-NC.
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Abstract
We have created EcoPLOT (parameterized linkage of omics-driven technologies), a web-app for the dynamic, interactive analysis of biogeochemical datasets that combines state-of-the-art analysis tools to statistically and graphically explore environmental, geochemical and microbiome datasets. Using the iterative random forest, a machine learning algorithm, EcoPLOT allows for the de novo discovery of drivers which exhibit significant impact on plant, microbial or soil dynamics. EcoPLOT is built entirely within the R language. It can be accessed through any system where R is installed, including Windows, Mac and most Linux systems. EcoPLOT is free to use and can be accessed at https://github.com/cdsanchez18/EcoPLOT.
Medical subject headings
- Software
- Microbiota