Struct-f4: a Rcpp package for ancestry profile and population structure inference from f4-statistics.
basic_science · Level V
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- Record sourced from PubMed, PMID 35080599.
- Also identified by DOI 10.1093/bioinformatics/btac046 and PMC identifier 8963280.
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Abstract
Visualization and inference of population structure is increasingly important for fundamental and applied research. Here, we present Struct-f4, providing automated solutions to characterize and summarize the genetic ancestry profile of individuals, assess their genetic affinities, identify admixture sources and quantify admixture levels. Struct-f4 is written in Rcpp and relies on f4-statistics and Markov Chain Monte Carlo (MCMC) optimization. It is freely available under GNU General Public License in Bitbucket (https://bitbucket.org/plibradosanz/structf4/). Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software