ASPICov: An automated pipeline for identification of SARS-Cov2 nucleotidic variants.
Where this comes from
- Record sourced from PubMed, PMID 35081137.
- Also identified by DOI 10.1371/journal.pone.0262953 and PMC identifier 8791494.
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Abstract
ASPICov was developed to provide a rapid, reliable and complete analysis of NGS SARS-Cov2 samples to the biologist. This broad application tool allows to process samples from either capture or amplicon strategy and Illumina or Ion Torrent technology. To ensure FAIR data analysis, this Nextflow pipeline follows nf-core guidelines and use Singularity containers. Pipeline is implemented and available at https://gitlab.com/vtilloy/aspicov.
Medical subject headings
- COVID-19
- Computational Biology
- High-Throughput Nucleotide Sequencing
- RNA, Viral
- SARS-CoV-2
- Whole Genome Sequencing