Active label cleaning for improved dataset quality under resource constraints.

Bernhardt, Mélanie; Castro, Daniel C; Tanno, Ryutaro; Schwaighofer, Anton; Tezcan, Kerem C; Monteiro, Miguel; Bannur, Shruthi; Lungren, Matthew P et al. · Nat Commun · 2022

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Abstract

Imperfections in data annotation, known as label noise, are detrimental to the training of machine learning models and have a confounding effect on the assessment of model performance. Nevertheless, employing experts to remove label noise by fully re-annotating large datasets is infeasible in resource-constrained settings, such as healthcare. This work advocates for a data-driven approach to prioritising samples for re-annotation-which we term "active label cleaning". We propose to rank instances according to estimated label correctness and labelling difficulty of each sample, and introduce a simulation framework to evaluate relabelling efficacy. Our experiments on natural images and on a specifically-devised medical imaging benchmark show that cleaning noisy labels mitigates their negative impact on model training, evaluation, and selection. Crucially, the proposed approach enables correcting labels up to 4 × more effectively than typical random selection in realistic conditions, making better use of experts' valuable time for improving dataset quality.

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