Methylartist: tools for visualizing modified bases from nanopore sequence data.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 35482479.
- Also identified by DOI 10.1093/bioinformatics/btac292 and PMC identifier 9154218.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Methylartist is a consolidated suite of tools for processing, visualizing and analysing nanopore-derived modified base calls. All detectable methylation types (e.g. 5mCpG, 5hmC, 6mA) are supported, enabling integrated study of base pairs when modified naturally or as part of an experimental protocol. Methylartist is implemented in Python and is installable via PyPI and bioconda. Source code and test data are available at https://github.com/adamewing/methylartist. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Nanopores