RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 35543462.
- Also identified by DOI 10.1093/bioinformatics/btac317 and PMC identifier 9191206.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Mapping positional features from one-dimensional (1D) sequences onto three-dimensional (3D) structures of biological macromolecules is a powerful tool to show geometric patterns of biochemical annotations and provide a better understanding of the mechanisms underpinning protein and nucleic acid function at the atomic level. We present a new library designed to display fully customizable interactive views between 1D positional features of protein and/or nucleic acid sequences and their 3D structures as isolated chains or components of macromolecular assemblies. https://github.com/rcsb/rcsb-saguaro-3d. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software
- Nucleic Acids