CNpare: matching DNA copy number profiles.
Where this comes from
- Record sourced from PubMed, PMID 35640971.
- Also identified by DOI 10.1093/bioinformatics/btac371 and PMC identifier 9272807.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Selecting the optimal cancer cell line for an experiment can be challenging given the diversity of lines available. Here, we present CNpare, which identifies similar cell line models based on genome-wide DNA copy number. CNpare is available as an R package at https://github.com/macintyrelab/CNpare. All analysis performed in the manuscript can be reproduced via the code found at https://github.com/macintyrelab/CNpare_analyses. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software
- Neoplasms