TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines.

Ershov, Dmitry; Phan, Minh-Son; Pylvänäinen, Joanna W; Rigaud, Stéphane U; Le Blanc, Laure; Charles-Orszag, Arthur; Conway, James R W; Laine, Romain F et al. · Nat Methods · 2022

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Abstract

TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.

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