SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.
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- Record sourced from PubMed, PMID 35695743.
- Also identified by DOI 10.1093/bioinformatics/btac389 and PMC identifier 9991892.
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Abstract
Here, we introduce SNIKT, a command-line tool for sequence-independent visual confirmation and input-assisted removal of adapter contamination in whole-genome shotgun or metagenomic shotgun long-read sequencing DNA or RNA data. SNIKT is implemented in R and is compatible with Unix-like platforms. The source code, along with documentation, is freely available under an MIT license at https://github.com/piyuranjan/SNIKT. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software
- Metagenomics