PLN: Parasitic-Like Network for Barely Supervised Medical Image Segmentation.

Abstract

It is known that annotations for 3D medical image segmentation tasks are laborious, time-consuming and expensive. Considering the similarities existing in inter-slice and inter-volume, we believe that the delineation way and the model architecture should be tightly coupled. In this paper, by introducing an extremely sparse annotation way of labeling only one slice per 3D image, we investigate a novel barely-supervised segmentation setting with only a few sparsely-labeled images along with a large amount of unlabeled images. To achieve this goal, we present a new parasitic-like network including a registration module (as host) and a semi-supervised segmentation module (as parasite) to deal with inter-slice label propagation and inter-volume segmentation prediction, respectively. Specifically, our parasitism mechanism effectively achieves the collaboration of these two modules through three stages of infection, development and eclosion, providing accurate pseudo-labels for training. Extensive results demonstrate that our framework is capable of achieving high performance on extremely sparse annotation tasks, e.g., we achieve Dice of 84.83% on LA dataset with only 16 labeled slices. The code is available athttps://github.com/ShumengLI/PLN.