Easy NanoString nCounter data analysis with the NanoTube.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 36440915.
- Also identified by DOI 10.1093/bioinformatics/btac762 and PMC identifier 9805552.
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Abstract
The NanoTube is an open-source pipeline that simplifies the processing, quality control, normalization and analysis of NanoString nCounter gene expression data. It is implemented in an extensible R library, which performs a variety of gene expression analysis techniques and contains additional functions for integration with other R libraries performing advanced NanoString analysis techniques. Additionally, the NanoTube web application is available as a simple tool for researchers without programming expertise. The NanoTube R package is available on Bioconductor under the GPL-3 license (https://www.bioconductor.org/packages/NanoTube/). The R-Shiny application can be downloaded at https://github.com/calebclass/Shiny-NanoTube, or a simplified version of this application can be run on all major browsers, at https://research.butler.edu/nanotube/. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software
- Nanotubes