DARTpaths, an in silico platform to investigate molecular mechanisms of compounds.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 36477801.
- Also identified by DOI 10.1093/bioinformatics/btac767 and PMC identifier 9825785.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Xpaths is a collection of algorithms that allow for the prediction of compound-induced molecular mechanisms of action by integrating phenotypic endpoints of different species; and proposes follow-up tests for model organisms to validate these pathway predictions. The Xpaths algorithms are applied to predict developmental and reproductive toxicity (DART) and implemented into an in silico platform, called DARTpaths. All code is available on GitHub https://github.com/Xpaths/dartpaths-app under Apache license 2.0, detailed overview with demo is available at https://www.vivaltes.com/dartpaths/. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Software
- Algorithms