RNAget: an API to securely retrieve RNA quantifications.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 36897015.
- Also identified by DOI 10.1093/bioinformatics/btad126 and PMC identifier 10081869.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Large-scale sharing of genomic quantification data requires standardized access interfaces. In this Global Alliance for Genomics and Health project, we developed RNAget, an API for secure access to genomic quantification data in matrix form. RNAget provides for slicing matrices to extract desired subsets of data and is applicable to all expression matrix-format data, including RNA sequencing and microarrays. Further, it generalizes to quantification matrices of other sequence-based genomics such as ATAC-seq and ChIP-seq. https://ga4gh-rnaseq.github.io/schema/docs/index.html.
Medical subject headings
- RNA
- Software