itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 37225402.
- Also identified by DOI 10.1093/bioinformatics/btad339 and PMC identifier 10243930.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
iTOL is a powerful and comprehensive phylogenetic tree visualization engine. However, adjusting to new templates can be time-consuming, especially when many templates are available. We developed an R package namely itol.toolkit to help users generate all 23 types of annotation files in iTOL. This R package also provides an all-in-one data structure to store data and themes, accelerating the step from metadata to annotation files of iTOL visualizations through automatic workflows. The manual and source code are available at https://github.com/TongZhou2017/itol.toolkit.
Medical subject headings
- Software
- Metadata