KOunt: a reproducible KEGG orthologue abundance workflow.
Where this comes from
- Record sourced from PubMed, PMID 37535671.
- Also identified by DOI 10.1093/bioinformatics/btad483 and PMC identifier 10423021.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Accurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snakemake pipeline, that precisely quantifies KEGG orthologue abundance. KOunt is available on GitHub: https://github.com/WatsonLab/KOunt. The KOunt reference database is available on figshare: https://doi.org/10.6084/m9.figshare.21269715. Test data are available at https://doi.org/10.6084/m9.figshare.22250152 and version 1.2.0 of KOunt at https://doi.org/10.6084/m9.figshare.23607834.
Medical subject headings
- Software
- Metagenome