cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis.

Luna, Augustin; Shah, Omar; Sander, Chris; Shannon, Paul · PLoS One · 2023

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Abstract

cyjShiny is an open-source R package that allows users to embed network visualization into Shiny apps and R Markdown documents. cyjShiny (https://github.com/cytoscape/cyjShiny) builds on the cytoscape.js Javascript graph library. Additionally, the package provides helper functions to convert common R data representations (e.g., data.frame) into forms compatible with cytoscape.js.

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