SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 37713452.
- Also identified by DOI 10.1093/bioinformatics/btad575 and PMC identifier 10563142.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Scorpio provides a set of command line utilities for classifying, haplotyping, and defining constellations of mutations for an aligned set of genome sequences. It was developed to enable exploration and classification of variants of concern within the SARS-CoV-2 pandemic, but can be applied more generally to other species. Scorpio is an open-source project distributed under the GNU GPL version 3 license. Source code and binaries are available at https://github.com/cov-lineages/scorpio, and binaries are also available from Bioconda. SARS-CoV-2 specific definitions can be installed as a separate dependency from https://github.com/cov-lineages/constellations.
Medical subject headings
- Software
- Genome, Viral
- Drugs, Chinese Herbal