A chemical catalyst enabling histone acylation with endogenous acyl-CoA.

Habazaki, Misuzu; Mizumoto, Shinsuke; Kajino, Hidetoshi; Kujirai, Tomoya; Kurumizaka, Hitoshi; Kawashima, Shigehiro A; Yamatsugu, Kenzo; Kanai, Motomu · Nat Commun · 2023

basic_science · Level V

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Abstract

Life emerges from a network of biomolecules and chemical reactions catalyzed by enzymes. As enzyme abnormalities are often connected to various diseases, a chemical catalyst promoting physiologically important intracellular reactions in place of malfunctional endogenous enzymes would have great utility in understanding and treating diseases. However, research into such small-molecule chemical enzyme surrogates remains limited, due to difficulties in developing a reactive catalyst capable of activating inert cellular metabolites present at low concentrations. Herein, we report a small-molecule catalyst, mBnA, as a surrogate for a histone acetyltransferase. A hydroxamic acid moiety of suitable electronic characteristics at the catalytic site, paired with a thiol-thioester exchange process, enables mBnA to activate endogenous acyl-CoAs present in low concentrations and promote histone lysine acylations in living cells without the addition of exogenous acyl donors. An enzyme surrogate utilizing cellular metabolites will be a unique tool for elucidation of and synthetic intervention in the chemistry of life and disease.

Medical subject headings