Cyclone: open-source package for simulation and analysis of finite dynamical systems.

Dimitrova, Elena S; Knapp, Adam C; Stigler, Brandilyn; Stillman, Michael E · Bioinformatics · 2023

basic_science · Level V

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Abstract

While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set. Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license.

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