Toxin:antitoxin ratio sensing autoregulation of the <i>Vibrio cholerae parDE2</i> module.

Garcia-Rodriguez, Gabriela; Girardin, Yana; Kumar Singh, Ranjan; Volkov, Alexander N; Van Dyck, Jeroen; Muruganandam, Gopinath; Sobott, Frank; Charlier, Daniel et al. · Sci Adv · 2024

basic_science · Level V

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Abstract

The <i>parDE</i> family of toxin-antitoxin (TA) operons is ubiquitous in bacterial genomes and, in <i>Vibrio cholerae</i>, is an essential component to maintain the presence of chromosome II. Here, we show that transcription of the <i>V. cholerae parDE2</i> (Vc<i>parDE</i>) operon is regulated in a toxin:antitoxin ratio-dependent manner using a molecular mechanism distinct from other type II TA systems. The repressor of the operon is identified as an assembly with a 6:2 stoichiometry with three interacting ParD2 dimers bridged by two ParE2 monomers. This assembly docks to a three-site operator containing 5'- GGTA-3' motifs. Saturation of this TA complex with ParE2 toxin results in disruption of the interface between ParD2 dimers and the formation of a TA complex of 2:2 stoichiometry. The latter is operator binding-incompetent as it is incompatible with the required spacing of the ParD2 dimers on the operator.

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