Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.

Renton, Angela I; Dao, Thuy T; Johnstone, Tom; Civier, Oren; Sullivan, Ryan P; White, David J; Lyons, Paris; Slade, Benjamin M et al. · Nat Methods · 2024

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Abstract

Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.

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