GeNLP: a web tool for NLP-based exploration and prediction of microbial gene function.
Where this comes from
- Record sourced from PubMed, PMID 38291951.
- Also identified by DOI 10.1093/bioinformatics/btae034 and PMC identifier 10868303.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
GeNLP is a web application that enables exploring microbial gene "semantics" and predictions of uncharacterized gene families based on their genomic context. It utilizes a pre-trained language model to uncover gene relationships and allows users to access and utilize the data as well as make their own predictions through an interactive interface. The web application is accessible from all browsers at: http://gnlp.bursteinlab.org/. All source codes are freely available from GitHub under the MIT license here: https://github.com/burstein-lab/genomic-nlp-server.
Medical subject headings
- Software
- Genomics