GINSA: an accumulator for paired locality and next-generation small ribosomal subunit sequence data.
Where this comes from
- Record sourced from PubMed, PMID 38502961.
- Also identified by DOI 10.1093/bioinformatics/btae152 and PMC identifier 10987208.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Motivated by the challenges of decentralized genetic data spread across multiple international organizations, GINSA leverages the Global Biodiversity Information Facility infrastructure to automatically retrieve and link small ribosomal subunit sequences with locality information. Testing on taxa from major organism groups demonstrates broad applicability across taxonomic levels and dataset sizes. GINSA is a freely accessible Python program under the MIT License and can be installed from PyPI via pip.
Medical subject headings
- Software
- Biodiversity