A machine-readable specification for genomics assays.
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- Record sourced from PubMed, PMID 38579259.
- Also identified by DOI 10.1093/bioinformatics/btae168 and PMC identifier 11009023.
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Abstract
Understanding the structure of sequenced fragments from genomics libraries is essential for accurate read preprocessing. Currently, different assays and sequencing technologies require custom scripts and programs that do not leverage the common structure of sequence elements present in genomics libraries. We present seqspec, a machine-readable specification for libraries produced by genomics assays that facilitates standardization of preprocessing and enables tracking and comparison of genomics assays. The specification and associated seqspec command line tool is available at https://www.doi.org/10.5281/zenodo.10213865.
Medical subject headings
- Software
- Genomics