Machine learning prediction of prime editing efficiency across diverse chromatin contexts.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 38907037.
- Also identified by DOI 10.1038/s41587-024-02268-2 and PMC identifier 7617539.
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Abstract
The success of prime editing depends on the prime editing guide RNA (pegRNA) design and target locus. Here, we developed machine learning models that reliably predict prime editing efficiency. PRIDICT2.0 assesses the performance of pegRNAs for all edit types up to 15 bp in length in mismatch repair-deficient and mismatch repair-proficient cell lines and in vivo in primary cells. With ePRIDICT, we further developed a model that quantifies how local chromatin environments impact prime editing rates.
Medical subject headings
- Machine Learning
- Chromatin
- Gene Editing