Virtual node graph neural network for full phonon prediction.

Okabe, Ryotaro; Chotrattanapituk, Abhijatmedhi; Boonkird, Artittaya; Andrejevic, Nina; Fu, Xiang; Jaakkola, Tommi S; Song, Qichen; Nguyen, Thanh et al. · Nat Comput Sci · 2024

basic_science · Level V

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Abstract

Understanding the structure-property relationship is crucial for designing materials with desired properties. The past few years have witnessed remarkable progress in machine-learning methods for this connection. However, substantial challenges remain, including the generalizability of models and prediction of properties with materials-dependent output dimensions. Here we present the virtual node graph neural network to address the challenges. By developing three virtual node approaches, we achieve Γ-phonon spectra and full phonon dispersion prediction from atomic coordinates. We show that, compared with the machine-learning interatomic potentials, our approach achieves orders-of-magnitude-higher efficiency with comparable to better accuracy. This allows us to generate databases for Γ-phonon containing over 146,000 materials and phonon band structures of zeolites. Our work provides an avenue for rapid and high-quality prediction of phonon band structures enabling materials design with desired phonon properties. The virtual node method also provides a generic method for machine-learning design with a high level of flexibility.