Closing Kok's cycle of nature's water oxidation catalysis.

Guo, Yu; He, Lanlan; Ding, Yunxuan; Kloo, Lars; Pantazis, Dimitrios A; Messinger, Johannes; Sun, Licheng · Nat Commun · 2024

basic_science · Level V

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Abstract

The Mn<sub>4</sub>CaO<sub>5(6)</sub> cluster in photosystem II catalyzes water splitting through the S<sub>i</sub> state cycle (i = 0-4). Molecular O<sub>2</sub> is formed and the natural catalyst is reset during the final S<sub>3</sub> → (S<sub>4</sub>) → S<sub>0</sub> transition. Only recently experimental breakthroughs have emerged for this transition but without explicit information on the S<sub>0</sub>-state reconstitution, thus the progression after O<sub>2</sub> release remains elusive. In this report, our molecular dynamics simulations combined with density functional calculations suggest a likely missing link for closing the cycle, i.e., restoring the first catalytic state. Specifically, the formation of closed-cubane intermediates with all hexa-coordinate Mn is observed, which would undergo proton release, water dissociation, and ligand transfer to produce the open-cubane structure of the S<sub>0</sub> state. Thereby, we theoretically identify the previously unknown structural isomerism in the S<sub>0</sub> state that acts as the origin of the proposed structural flexibility prevailing in the cycle, which may be functionally important for nature's water oxidation catalysis.