CatReNet: interactive analysis of (auto-) catalytic reaction networks.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 39163485.
- Also identified by DOI 10.1093/bioinformatics/btae515 and PMC identifier 11361791.
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Abstract
Catalytic reaction networks serve as fundamental models for understanding biochemical systems. CatReNet is a novel software designed to facilitate interactive analysis of such networks. It offers fast and exact algorithms for computing various types of self-sustaining autocatalytic subnetworks, including so-called CAFs (constructively autocatalytic food-generated networks), RAFs (reflexively autocatalytic food-generated networks), and pseudo-RAFs. It provides dynamic visualizations to aid exploration and understanding. This open-source Java application runs on Linux, MacOS, and Windows. It is available at https://github.com/husonlab/catrenet under a GPL3 license.
Medical subject headings
- Software
- Algorithms