mgikit: demultiplexing toolkit for MGI fastq files.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 39259173.
- Also identified by DOI 10.1093/bioinformatics/btae554 and PMC identifier 11427695.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
MGI sequencing is reported to be an inexpensive solution to obtain genomics information. There is a growing need for software and tools to analyse MGI's outputs efficiently. mgikit is a tool collection to demultiplex MGI fastq data, reformat it effectively and produce visual quality reports. mgikit overcomes several limitations of the standard MGI demultiplexer. It is highly customizable to suit different kinds of datasets and is designed to achieve high performance and optimal memory utilization. The tool and its documentation are available at: https://sagc-bioinformatics.github.io/mgikit/.
Medical subject headings
- Software