scToppR: a coding-friendly R interface to ToppGene.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 39340795.
- Also identified by DOI 10.1093/bioinformatics/btae582 and PMC identifier 11552619.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
The scToppR package provides a ToppGene interface from R programs/scripts to fully access/control the database for functional enrichment without the need for active interaction on its Web site (https://toppgene.cchmc.org/). The library facilitates the functional enrichment analysis and visualization by interacting with ToppGene, downloading the functional enrichment dataframes, and using R environment to visualize the final results. Code and documentation are currently available at https://github.com/BioinformaticsMUSC/scToppR.
Medical subject headings
- Software