Damsel: analysis and visualisation of DamID sequencing in R.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 39558607.
- Also identified by DOI 10.1093/bioinformatics/btae695 and PMC identifier 11604169.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
DamID sequencing is a technique to map the genome-wide interaction of a protein with DNA. Damsel is the first Bioconductor package to provide an end to end analysis for DamID sequencing data within R. Damsel performs quantification and testing of significant binding sites along with exploratory and visual analysis. Damsel produces results consistent with previous analysis approaches. The R package Damsel is available for install through the Bioconductor project https://bioconductor.org/packages/release/bioc/html/Damsel.html and the code is available on GitHub https://github.com/Oshlack/Damsel/.
Medical subject headings
- Software
- Sequence Analysis, DNA