Transient silencing of hypermutation preserves B cell affinity during clonal bursting.

Pae, Juhee; Schwan, Niklas; Ottino-Loffler, Bertrand; DeWitt, William S; Garg, Amar; Bortolatto, Juliana; Vora, Ashni A; Shen, Jin-Jie et al. · Nature · 2025

basic_science · Level V

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Abstract

In the course of antibody affinity maturation, germinal centre (GC) B cells mutate their immunoglobulin heavy- and light-chain genes in a process known as somatic hypermutation (SHM)<sup>1-4</sup>. Panels of mutant B cells with different binding affinities for antigens are then selected in a Darwinian manner, which leads to a progressive increase in affinity among the population<sup>5</sup>. As with any Darwinian process, rare gain-of-fitness mutations must be identified and common loss-of-fitness mutations avoided<sup>6</sup>. Progressive acquisition of mutations therefore poses a risk during large proliferative bursts<sup>7</sup>, when GC B cells undergo several cell cycles in the absence of affinity-based selection<sup>8-13</sup>. Using a combination of in vivo mouse experiments and mathematical modelling, here we show that GCs achieve this balance by strongly suppressing SHM during clonal-burst-type expansion, so that a large fraction of the progeny generated by these bursts does not deviate from their ancestral genotype. Intravital imaging and image-based cell sorting of a mouse strain carrying a reporter of cyclin-dependent kinase 2 (CDK2) activity showed that B cells that are actively undergoing proliferative bursts lack the transient CDK2<sup>low</sup> 'G0-like' phase of the cell cycle in which SHM takes place. We propose a model in which inertially cycling B cells mostly delay SHM until the G0-like phase that follows their final round of division in the GC dark zone, thus maintaining affinity as they clonally expand in the absence of selection.

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