β-Carotene alleviates substrate inhibition caused by asymmetric cooperativity.

Liao, Jieren; Shahul Hameed, Umar F; Hoffmann, Timothy D; Kurze, Elisabeth; Sun, Guangxin; Steinchen, Wieland; Nicoli, Alessandro; Di Pizio, Antonella et al. · Nat Commun · 2025

basic_science · Level V

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Abstract

Enzymes are essential catalysts in biological systems. Substrate inhibition, once dismissed, is now observed in 20% of enzymes<sup>1</sup> and is attributed to the formation of an unproductive enzyme-substrate complex, with no structural evidence of unproductivity provided to date<sup>1-6</sup>. This study uncovers the molecular mechanism of substrate inhibition in tobacco glucosyltransferase NbUGT72AY1, which transfers glucose to phenols for plant protection. The peculiarity that β-carotene strongly attenuates the substrate inhibition of NbUGT72AY1, despite being a competitive inhibitor, allows to determine the conformational changes that occur during substrate binding in both active and substrate-inhibited complexes. Crystallography reveals structurally different ternary enzyme-substrate complexes that do not conform to classical mechanisms. An alternative pathway suggests substrates bind randomly, but the reaction occurs only if a specific order is followed (asymmetric cooperativity). This unreported paradigm explains substrate inhibition and reactivation by competitive inhibitors, opening new research avenues in metabolic regulation and industrial applications.

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