Capturing structural intermediates in an animal-like cryptochrome photoreceptor by time-resolved crystallography.

Maestre-Reyna, Manuel; Hosokawa, Yuhei; Wang, Po-Hsun; Saft, Martin; Caramello, Nicolas; Engilberge, Sylvain; Franz-Badur, Sophie; Gusti Ngurah Putu, Eka Putra et al. · Sci Adv · 2025

basic_science · Level V

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Abstract

Animal-like cryptochromes are photoreceptors that control circadian rhythm and signaling in many eukaryotes. Transient photoreduction of the cryptochrome flavin chromophore initiated signaling via a poorly understood mechanism. By serial femtosecond crystallography (SFX), we show that the photoreduction mechanism of <i>Chlamydomonas reinhardtii</i> cryptochrome involves three loci [carboxyl-terminal region, a transient protonation pathway, and flavin adenine dinucleotide (FAD)-binding site] acting in unison to accomplish three effects: radical pair stabilization, protonation of FAD radical, and formation of the signaling state. Using 19 time-resolved SFX snapshots between 10 nanoseconds and 233 milliseconds, we found that light-driven FAD<sup>•-</sup>/tyrosyl-373 radical pair (RP) formation primes α22 unfolding. Electron transfer-dependent protonation of aspartate-321 by tyrosine-373 is the epicenter of unfolding by disrupting salt bridges between α22 and the photolyase homology region. Before helix unfolding, another pathway opens transiently for FAD<sup>•-</sup> protonation and RP stabilization. This link between RP formation and conformational changes provides a structural basis for signaling by animal-like cryptochromes.

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