Enabling pan-repository reanalysis for big data science of public metabolomics data.
Where this comes from
- Record sourced from PubMed, PMID 40413169.
- Also identified by DOI 10.1038/s41467-025-60067-y and PMC identifier 12103507.
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Abstract
Public untargeted metabolomics data is a growing resource for metabolite and phenotype discovery; however, accessing and utilizing these data across repositories pose significant challenges. Therefore, here we develop pan-repository universal identifiers and harmonized cross-repository metadata. This ecosystem facilitates discovery by integrating diverse data sources from public repositories including MetaboLights, Metabolomics Workbench, and GNPS/MassIVE. Our approach simplified data handling and unlocks previously inaccessible reanalysis workflows, fostering unmatched research opportunities.
Medical subject headings
- Metabolomics
- Big Data
- Data Science