nf-UnO pipeline: A metagenomic co-assembly pipeline for novel pathogen detection from mNGS outbreak sets.
Where this comes from
- Record sourced from PubMed, PMID 40748702.
- Also identified by DOI 10.1093/bioinformatics/btaf436 and PMC identifier 12360835.
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Abstract
nf-UnO is a pipeline implemented in Nextflow to identify novel pathogens from metagenomic shotgun sequencing of epidemiologically related foodborne outbreak specimens. nf-UnO uses MIDAS2, metagenomic co-assembly, multiple binning programs, and read mapping to metagenomically assembled genomes to detect potential etiological agents found in common across outbreak specimens. https://github.com/uel3/nf-UnO.
Medical subject headings
- Metagenomics
- Disease Outbreaks
- Software
- Foodborne Diseases