Warp analysis research pipelines: cloud-optimized workflows for biological data processing and reproducible analysis.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 40924537.
- Also identified by DOI 10.1093/bioinformatics/btaf494 and PMC identifier 12490826.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
In the era of large data, the cloud is increasingly used as a computing environment, necessitating the development of cloud-compatible pipelines that can provide uniform analysis across disparate biological datasets. The Warp Analysis Research Pipelines (WARP) repository is a GitHub repository of open-source, cloud-optimized workflows for biological data processing that are semantically versioned, tested, and documented. A companion repository, WARP-Tools, hosts Docker containers and custom tools used in WARP workflows. The WARP and WARP-Tools repositories and code are freely available at https://github.com/broadinstitute/WARP and https://github.com/broadinstitute/WARP-tools, respectively. The pipelines are available for download from the WARP repository, can be exported from Dockstore, and can be imported to a bioinformatics platform such as Terra.
Medical subject headings
- Workflow
- Computational Biology
- Cloud Computing
- Software