Structure and mechanism of the mitochondrial calcium transporter NCLX.

Fan, Minrui; Tsai, Chen-Wei; Zhang, Jinru; Zhang, Jianxiu; Krishnan, Aswini R; Liu, Tsung-Yun; Huang, Yu-Lun; Aydin, Deniz et al. · Nature · 2025

basic_science · Level V

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Abstract

As a key mitochondrial Ca<sup>2+</sup> transporter, NCLX regulates intracellular Ca<sup>2+</sup> signalling and vital mitochondrial processes<sup>1-3</sup>. The importance of NCLX in cardiac and nervous-system physiology is reflected by acute heart failure and neurodegenerative disorders caused by its malfunction<sup>4-9</sup>. Despite substantial advances in the field, the transport mechanisms of NCLX remain unclear. Here we report the cryo-electron microscopy structures of NCLX, revealing its architecture, assembly, major conformational states and a previously undescribed mechanism for alternating access. Functional analyses further reveal an unexpected transport function of NCLX as a H<sup>+</sup>/Ca<sup>2+</sup> exchanger, rather than as a Na<sup>+</sup>/Ca<sup>2+</sup> exchanger as widely believed<sup>1</sup>. These findings provide critical insights into mitochondrial Ca<sup>2+</sup> homeostasis and signalling, offering clues for developing therapies to treat diseases related to abnormal mitochondrial Ca<sup>2+</sup>.

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