CompareM2 is a genomes-to-report pipeline for comparing microbial genomes.
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Where this comes from
- Record sourced from PubMed, PMID 40971807.
- Also identified by DOI 10.1093/bioinformatics/btaf517 and PMC identifier 12466929.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Here, we present CompareM2, a genomes-to-report pipeline for comparative analysis of bacterial and archaeal genomes derived from isolates and metagenomic assemblies. CompareM2 is easy to install and operate, designed in such a way that the user can install the complete software in one step and launch all analyses on a set of microbial genomes (bacterial and archaeal) in a single action. The central results generated via the CompareM2 workflow are emphasized in a portable dynamic report document. CompareM2 is a free software that is scalable to a range of project sizes, and welcomes modifications and pull requests from the community on its Git repository at https://github.com/cmkobel/comparem2.
Medical subject headings
- Software
- Genome, Bacterial
- Genome, Archaeal
- Genome, Microbial